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    Short Read Sequencing Market

    ID: MRFR/HC/20278-HCR
    128 Pages
    Rahul Gotadki
    October 2025

    Short Read Sequencing Market Research Report By Application (Clinical diagnostics, Agrigenomics, Oncology, Genomics Research, Molecular Biology), By Technology (Illumina sequencing, Ion Torrent sequencing, SOLiD sequencing, SMRT sequencing), By End Use (Academic research institutes, Pharmaceutical companies, Biotechnology companies, Hospitals and clinics), By Product Type (Sequencing kits, Sequencing services, Sequencing instruments) and By Regional (North America, Europe, South America, Asia Pacific, Middle East and Africa) - Forecast to 2035

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    Short Read Sequencing Market Infographic
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    Short Read Sequencing Market Summary

    As per MRFR analysis, the Short Read Sequencing Market was estimated at 9.485 USD Billion in 2024. The Short Read Sequencing industry is projected to grow from 11.31 USD Billion in 2025 to 65.49 USD Billion by 2035, exhibiting a compound annual growth rate (CAGR) of 19.2 during the forecast period 2025 - 2035.

    Key Market Trends & Highlights

    The Short Read Sequencing Market is experiencing robust growth driven by technological advancements and increasing demand for personalized medicine.

    • North America remains the largest market for short read sequencing, driven by significant investments in genomic research.
    • The Asia-Pacific region is emerging as the fastest-growing market, fueled by rising healthcare expenditures and technological adoption.
    • Clinical diagnostics continues to dominate the market, while oncology is rapidly gaining traction as a key growth segment.
    • Technological advancements in sequencing and the growing interest in personalized medicine are major drivers propelling market expansion.

    Market Size & Forecast

    2024 Market Size 9.485 (USD Billion)
    2035 Market Size 65.49 (USD Billion)
    CAGR (2025 - 2035) 19.2%

    Major Players

    Illumina (US), Thermo Fisher Scientific (US), BGI Genomics (CN), Roche (CH), Qiagen (DE), Oxford Nanopore Technologies (GB), Pacific Biosciences (US), Agilent Technologies (US), Genomatix (DE)

    Short Read Sequencing Market Trends

    The Short Read Sequencing Market is currently experiencing a transformative phase, driven by advancements in technology and increasing applications in various fields such as genomics, personalized medicine, and agricultural research. The integration of high-throughput sequencing technologies has enabled researchers to generate vast amounts of data efficiently, thereby enhancing the understanding of genetic variations and their implications in health and disease. Furthermore, the growing emphasis on precision medicine is propelling the demand for accurate and rapid sequencing methods, which are essential for tailoring treatments to individual patients. This trend indicates a shift towards more targeted therapeutic approaches, potentially improving patient outcomes and reducing healthcare costs. In addition, the Short Read Sequencing Market is witnessing a surge in collaborations between academic institutions and biotechnology companies. These partnerships aim to foster innovation and accelerate the development of novel sequencing applications. As the market evolves, there is a notable increase in the adoption of cloud-based solutions for data storage and analysis, which facilitates easier access to sequencing data and enhances collaborative research efforts. Overall, the Short Read Sequencing Market appears poised for continued growth, driven by technological advancements and an expanding array of applications across diverse sectors.

    Technological Advancements

    Recent innovations in sequencing technologies are enhancing the efficiency and accuracy of short read sequencing. These advancements are likely to reduce costs and improve data quality, making sequencing more accessible to a broader range of researchers.

    Increased Demand for Personalized Medicine

    The growing focus on personalized medicine is driving the need for precise genomic information. Short read sequencing plays a crucial role in identifying genetic markers that can inform tailored treatment strategies, thereby improving patient care.

    Collaborative Research Initiatives

    There is a noticeable trend towards collaboration between academic institutions and industry players. These partnerships are fostering innovation and expanding the applications of short read sequencing, particularly in areas such as drug development and disease research.

    The Global Short Read Sequencing Market is poised for robust growth, driven by advancements in genomic technologies and increasing applications in personalized medicine.

    National Institutes of Health (NIH)

    Short Read Sequencing Market Drivers

    Rising Demand for Genomic Research

    The Short Read Sequencing Market is witnessing a surge in demand for genomic research, fueled by the increasing prevalence of genetic disorders and the need for effective diagnostics. Researchers and healthcare providers are increasingly utilizing short read sequencing to identify genetic mutations and variations associated with various diseases. The market is expected to grow at a compound annual growth rate (CAGR) of approximately 15% over the next five years, reflecting the growing interest in genomics. This demand is further supported by government initiatives aimed at promoting genomic research and personalized medicine. Consequently, the Short Read Sequencing Market is likely to benefit from this heightened focus on genomic studies, leading to innovative applications in clinical settings.

    Technological Advancements in Sequencing

    The Short Read Sequencing Market is experiencing rapid technological advancements that enhance sequencing capabilities. Innovations such as improved sequencing chemistries and advanced bioinformatics tools are driving efficiency and accuracy. For instance, the introduction of high-throughput sequencing platforms has significantly reduced the time required for genomic analysis. According to recent data, the market for sequencing technologies is projected to reach USD 10 billion by 2026, indicating a robust growth trajectory. These advancements not only facilitate faster data generation but also lower costs, making sequencing more accessible to researchers and clinicians alike. As a result, the Short Read Sequencing Market is poised for substantial expansion, driven by the continuous evolution of sequencing technologies.

    Growing Interest in Personalized Medicine

    The Short Read Sequencing Market is increasingly influenced by the growing interest in personalized medicine, which tailors medical treatment to individual characteristics. As healthcare shifts towards more personalized approaches, the demand for sequencing technologies that can provide detailed genetic information is rising. This trend is evident in the increasing number of clinical trials and studies focusing on genomics and its applications in personalized therapies. Market analysts project that the personalized medicine segment within the Short Read Sequencing Market could reach USD 8 billion by 2027. This growth is indicative of the potential for sequencing technologies to play a pivotal role in developing targeted treatments, thereby enhancing patient outcomes.

    Collaborative Research and Funding Initiatives

    The Short Read Sequencing Market is benefiting from collaborative research initiatives and increased funding from both public and private sectors. Partnerships between academic institutions, biotechnology companies, and government agencies are fostering innovation and accelerating research in genomics. These collaborations often lead to the development of new sequencing technologies and applications, enhancing the overall market landscape. Furthermore, funding initiatives aimed at supporting genomic research are on the rise, with several countries allocating substantial budgets for this purpose. This collaborative environment is expected to drive growth in the Short Read Sequencing Market, as it encourages knowledge sharing and resource pooling among stakeholders.

    Expansion of Applications in Clinical Diagnostics

    The Short Read Sequencing Market is expanding its applications in clinical diagnostics, particularly in oncology and rare disease detection. The ability to accurately sequence DNA and RNA has revolutionized the way diseases are diagnosed and treated. For example, short read sequencing is increasingly used to identify specific mutations in cancer patients, enabling targeted therapies. The market for clinical diagnostics utilizing sequencing technologies is projected to grow significantly, with estimates suggesting a value of USD 5 billion by 2025. This expansion is indicative of the growing recognition of the importance of precision medicine. As a result, the Short Read Sequencing Market is likely to see increased investment and innovation in diagnostic applications.

    Market Segment Insights

    By Application: Clinical Diagnostics (Largest) vs. Oncology (Fastest-Growing)

    In the Short Read Sequencing Market, Clinical Diagnostics holds the largest share due to its pivotal role in disease identification and management. This segment benefits from increasing accuracy and efficiency in genetic testing, which has become a standard in medical diagnostics. Other significant segments include Agrigenomics and Moleculor Biology, which are shaped by advancements in technology and research capabilities, though they currently represent smaller market portions compared to Clinical Diagnostics.

    Clinical Diagnostics (Dominant) vs. Oncology (Emerging)

    The Clinical Diagnostics segment is characterized by its focus on utilizing short read sequencing for genetic testing, pathogen detection, and personalized medicine. As healthcare institutions adopt more advanced diagnostic strategies, the demand for high-throughput sequencing solutions has surged. In contrast, the Oncology segment is emerging rapidly, driven by a need for molecular profiling and targeted therapies. This sector thrives on innovation and is influenced by ongoing research to enhance cancer treatment outcomes, making it a vital area for future growth in the market.

    By Technology: Illumina Sequencing (Largest) vs. Ion Torrent Sequencing (Fastest-Growing)

    In the Short Read Sequencing Market, Illumina sequencing holds the largest market share, solidifying its position as a leader due to its widespread adoption and reliable performance. This technology leverages sequencing by synthesis, allowing for high-throughput and cost-effective sequencing solutions, making it a preferred choice among researchers and clinicians. Conversely, Ion Torrent sequencing is gaining traction rapidly, known for its unique semiconductor technology that facilitates a faster sequencing process. It captures a growing share as researchers seek quicker results in genomics.

    Sequencing Technology: Illumina (Dominant) vs. Ion Torrent (Emerging)

    Illumina sequencing is recognized for its dominance in the Short Read Sequencing Market, characterized by high accuracy, vast scalability, and the capacity to generate massive amounts of data in a short time. Its robust technology is preferred for large-scale genomic studies and is often utilized in clinical applications. On the other hand, Ion Torrent sequencing represents an emerging force in the market. It offers a more compact and rapid sequencing option, appealing particularly for applications requiring fast turnaround times. As researchers and laboratories seek to enhance their sequencing capabilities, Ion Torrent's unique approach positions it well for future growth.

    By End Use: Academic Research Institutes (Largest) vs. Pharmaceutical Companies (Fastest-Growing)

    The Short Read Sequencing Market shows a diverse distribution among its key end-use segments. Academic research institutes hold the largest market share, primarily due to their extensive utilization of sequencing technologies for genomics, transcriptomics, and various research projects. Following closely are pharmaceutical companies, which leverage short read sequencing for drug discovery and development. Biotechnology companies and hospitals/clinics also play significant roles, contributing to the overall landscape but holding smaller shares in comparison to the aforementioned segments. The growth trends in this segment are driven by advancements in sequencing technologies and an increasing focus on personalized medicine. Pharmaceutical companies are experiencing rapid growth as they adopt these technologies more extensively in R&D processes. Meanwhile, academic institutions continue to push the boundaries of genetic research, fueling market demand. The collaborative efforts between academia and industry further bolster this segment's dynamics, fostering innovation and applications across various domains.

    Academic Research Institutes (Dominant) vs. Biotechnology Companies (Emerging)

    Academic research institutes are positioned as the dominant force in the Short Read Sequencing Market. Their extensive funding, focus on cutting-edge research, and collaboration with key industry players contribute significantly to their influence. These institutions utilize short read sequencing not only for basic research but also for applications in fields such as bioinformatics, population genetics, and plant genomics. On the other hand, biotechnology companies represent an emerging segment. They are leveraging short read sequencing for innovative product development, including genetic therapies and diagnostics. The synergy between these companies and academic institutions is driving rapid advancements, potentially paving the way for new breakthroughs and applications in healthcare and agriculture sectors.

    By Product Type: Sequencing Kits (Largest) vs. Sequencing Services (Fastest-Growing)

    In the Short Read Sequencing Market, sequencing kits hold the largest share, closely followed by sequencing services. Sequencing kits are essential for conducting sequencing processes, and their established market position reflects the continuous demand for reliable and accurate genetic analysis tools. Conversely, sequencing services are gaining traction among laboratories and research institutions, increasing their footprint in the market.

    Sequencing Kits (Dominant) vs. Sequencing Instruments (Emerging)

    Sequencing kits are widely recognized for their critical role in the short read sequencing process, offering consistency and reliability that labs depend on for accurate results. These kits streamline workflow and enhance throughput, ensuring compatibility with various sequencing platforms. Meanwhile, sequencing instruments are emerging, with technological advancements making them more accessible. These instruments are designed for high-throughput environments, supporting increasingly complex sequencing tasks. As innovation continues, instruments are expected to adapt to new applications, thereby expanding their capabilities in both clinical and research settings.

    Get more detailed insights about Short Read Sequencing Market

    Regional Insights

    North America : Innovation and Leadership Hub

    North America is the largest market for short read sequencing, holding approximately 45% of the global market share. The region's growth is driven by advancements in genomics, increased funding for research, and a robust healthcare infrastructure. Regulatory support from agencies like the FDA and NIH further catalyzes innovation and adoption of sequencing technologies, enhancing research capabilities and clinical applications. The United States leads the market, with significant contributions from Canada. Key players such as Illumina, Thermo Fisher Scientific, and Pacific Biosciences dominate the landscape, fostering a competitive environment. The presence of numerous research institutions and universities accelerates the development and application of sequencing technologies, ensuring North America's continued leadership in the field.

    Europe : Growing Market with Regulations

    Europe is the second-largest market for short read sequencing, accounting for approximately 30% of the global market share. The region benefits from strong regulatory frameworks and funding initiatives aimed at enhancing genomic research and healthcare applications. The European Union's Horizon 2020 program and various national initiatives promote innovation and collaboration among member states, driving demand for sequencing technologies. Leading countries include Germany, the UK, and France, with a competitive landscape featuring key players like Qiagen and Roche. The presence of advanced research facilities and a focus on personalized medicine further stimulate market growth. The European market is characterized by a mix of established companies and emerging startups, fostering a dynamic environment for innovation.

    Asia-Pacific : Emerging Market with Potential

    Asia-Pacific is an emerging powerhouse in the short read sequencing market, holding approximately 20% of the global market share. The region's growth is driven by increasing investments in genomics, rising healthcare expenditures, and a growing emphasis on personalized medicine. Countries like China and India are witnessing rapid advancements in biotechnology, supported by government initiatives and funding aimed at enhancing research capabilities. China is the largest market in the region, with significant contributions from India and Japan. Key players such as BGI Genomics and Oxford Nanopore Technologies are expanding their presence, fostering competition and innovation. The region's diverse healthcare needs and expanding research infrastructure create a favorable environment for the adoption of sequencing technologies, positioning Asia-Pacific for substantial growth in the coming years.

    Middle East and Africa : Untapped Potential and Growth

    The Middle East and Africa represent an emerging market for short read sequencing, accounting for approximately 5% of the global market share. The region is characterized by increasing investments in healthcare and biotechnology, driven by government initiatives aimed at improving healthcare infrastructure and research capabilities. The demand for genomic research is growing, particularly in countries like South Africa and the UAE, where there is a focus on personalized medicine and disease prevention. South Africa leads the market in the region, with a growing number of research institutions and collaborations enhancing the competitive landscape. The presence of international players is increasing, and local companies are emerging to meet the growing demand for sequencing technologies. As awareness of genomics expands, the Middle East and Africa are poised for significant growth in the short read sequencing market.

    Key Players and Competitive Insights

    The Short Read Sequencing Market is characterized by a dynamic competitive landscape, driven by rapid technological advancements and increasing demand for genomic research. Key players such as Illumina (US), Thermo Fisher Scientific (US), and BGI Genomics (CN) are at the forefront, each adopting distinct strategies to enhance their market positioning. Illumina (US) continues to focus on innovation, particularly in developing next-generation sequencing technologies, while Thermo Fisher Scientific (US) emphasizes strategic partnerships to expand its product offerings. BGI Genomics (CN) is leveraging its cost-effective solutions to penetrate emerging markets, thereby shaping a competitive environment that is increasingly influenced by technological prowess and strategic collaborations.

    In terms of business tactics, companies are localizing manufacturing and optimizing supply chains to enhance operational efficiency. The market structure appears moderately fragmented, with a mix of established players and emerging companies vying for market share. The collective influence of these key players fosters a competitive atmosphere where innovation and strategic positioning are paramount.

    In August 2025, Illumina (US) announced a collaboration with a leading pharmaceutical company to develop a comprehensive genomic profiling platform aimed at accelerating drug discovery. This strategic move underscores Illumina's commitment to integrating genomic data into clinical applications, potentially revolutionizing personalized medicine and enhancing its competitive edge in the market.

    In September 2025, Thermo Fisher Scientific (US) launched a new line of sequencers designed for high-throughput applications, which could significantly reduce sequencing costs and time. This initiative not only strengthens Thermo Fisher's product portfolio but also positions the company as a leader in the high-throughput sequencing segment, catering to the growing demand for rapid genomic analysis.

    In July 2025, BGI Genomics (CN) expanded its operations into Southeast Asia by establishing a new facility in Singapore. This expansion is strategically significant as it allows BGI to tap into the burgeoning market for genomic research in the region, enhancing its global footprint and competitive positioning against Western counterparts.

    As of October 2025, the Short Read Sequencing Market is witnessing trends such as digitalization, sustainability, and the integration of artificial intelligence in sequencing technologies. Strategic alliances are increasingly shaping the competitive landscape, enabling companies to pool resources and expertise. Looking ahead, competitive differentiation is likely to evolve from traditional price-based competition to a focus on innovation, technological advancements, and supply chain reliability, as companies strive to meet the growing demands of the genomic research community.

    Key Companies in the Short Read Sequencing Market market include

    Industry Developments

    Recent developments in the Short Read Sequencing Market have shown significant advancements, with companies such as Illumina and Thermo Fisher Scientific pushing the boundaries through innovations in sequencing technologies. As of September 2023, Illumina's acquisition of Grail has been finalized, expanding its presence in the multi-cancer early detection space while enhancing its sequencing capabilities. 

    BGI is also demonstrating growth, leveraging collaborations and partnerships to enhance their product offerings in short read sequencing. The global market is experiencing a surge in funding; for instance, Element Biosciences secured significant investment to enhance its engineering capabilities. Additionally, recent reports indicated that the market demand for short-read sequencing is expected to increase rapidly due to the expansion of applications across healthcare and environmental sectors. 

    Over the past two years, various advancements in technology have decreased costs and improved accessibility, fostering further growth within this competitive landscape, and shaping the future of genomics worldwide.

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    Future Outlook

    Short Read Sequencing Market Future Outlook

    The Short Read Sequencing Market is projected to grow at a 19.2% CAGR from 2024 to 2035, driven by advancements in technology, increasing demand for personalized medicine, and rising genomic research funding.

    New opportunities lie in:

    • Development of portable sequencing devices for field research applications.
    • Expansion of cloud-based data analysis platforms for genomic data.
    • Partnerships with pharmaceutical companies for drug development using sequencing insights.

    By 2035, the Short Read Sequencing Market is expected to be a pivotal component of genomic research and personalized healthcare.

    Market Segmentation

    Short Read Sequencing Market End Use Outlook

    • Academic research institutes
    • Pharmaceutical companies
    • Biotechnology companies
    • Hospitals and clinics

    Short Read Sequencing Market Technology Outlook

    • Illumina sequencing
    • Ion Torrent sequencing
    • SOLiD sequencing
    • SMRT sequencing

    Short Read Sequencing Market Application Outlook

    • Clinical diagnostics
    • Agrigenomics
    • Oncology
    • Genomics Research
    • Molecular Biology

    Short Read Sequencing Market Product Type Outlook

    • Sequencing kits
    • Sequencing services
    • Sequencing instruments

    Report Scope

    MARKET SIZE 20249.485(USD Billion)
    MARKET SIZE 202511.31(USD Billion)
    MARKET SIZE 203565.49(USD Billion)
    COMPOUND ANNUAL GROWTH RATE (CAGR)19.2% (2024 - 2035)
    REPORT COVERAGERevenue Forecast, Competitive Landscape, Growth Factors, and Trends
    BASE YEAR2024
    Market Forecast Period2025 - 2035
    Historical Data2019 - 2024
    Market Forecast UnitsUSD Billion
    Key Companies ProfiledMarket analysis in progress
    Segments CoveredMarket segmentation analysis in progress
    Key Market OpportunitiesAdvancements in bioinformatics tools enhance data analysis capabilities in the Short Read Sequencing Market.
    Key Market DynamicsTechnological advancements drive competitive forces, enhancing efficiency and accuracy in the Short Read Sequencing Market.
    Countries CoveredNorth America, Europe, APAC, South America, MEA

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    FAQs

    What is the projected market valuation of the Short Read Sequencing Market by 2035?

    The Short Read Sequencing Market is projected to reach a valuation of 65.49 USD Billion by 2035.

    What was the market valuation of the Short Read Sequencing Market in 2024?

    In 2024, the market valuation of the Short Read Sequencing Market was 9.485 USD Billion.

    What is the expected CAGR for the Short Read Sequencing Market during the forecast period 2025 - 2035?

    The expected CAGR for the Short Read Sequencing Market during the forecast period 2025 - 2035 is 19.2%.

    Which application segment is projected to have the highest valuation by 2035?

    The Oncology application segment is projected to reach a valuation of 20.0 USD Billion by 2035.

    What are the key players in the Short Read Sequencing Market?

    Key players in the Short Read Sequencing Market include Illumina, Thermo Fisher Scientific, BGI Genomics, Roche, and Qiagen.

    How does the valuation of Illumina sequencing compare to other technologies by 2035?

    Illumina sequencing is projected to reach 30.0 USD Billion by 2035, making it the leading technology in the market.

    What is the projected valuation for sequencing services by 2035?

    Sequencing services are projected to reach a valuation of 25.0 USD Billion by 2035.

    Which end-use segment is expected to grow the most by 2035?

    Biotechnology companies are expected to grow the most, with a projected valuation of 25.0 USD Billion by 2035.

    What is the expected valuation for sequencing kits by 2035?

    The expected valuation for sequencing kits by 2035 is 15.0 USD Billion.

    How does the Short Read Sequencing Market's growth compare to other segments?

    The Short Read Sequencing Market's growth appears robust, with a projected increase from 9.485 USD Billion in 2024 to 65.49 USD Billion by 2035.

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